Package: zebu 0.2.2.0
zebu: Local Association Measures
Implements the estimation of local (and global) association measures: Lewontin's D, Ducher's Z, pointwise mutual information, normalized pointwise mutual information and chi-squared residuals. The significance of local (and global) association is accessed using p-values estimated by permutations.
Authors:
zebu_0.2.2.0.tar.gz
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zebu.pdf |zebu.html✨
zebu/json (API)
NEWS
| # Install 'zebu' in R: |
| install.packages('zebu', repos = c('https://omfmartin.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/oliviermfmartin/zebu/issues
Last updated 2 years agofrom:514a78fdfe. Checks:12 OK. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Apr 01 2025 |
| R-4.5-win-x86_64 | OK | Apr 01 2025 |
| R-4.5-mac-x86_64 | OK | Apr 01 2025 |
| R-4.5-mac-aarch64 | OK | Apr 01 2025 |
| R-4.5-linux-x86_64 | OK | Apr 01 2025 |
| R-4.4-win-x86_64 | OK | Apr 01 2025 |
| R-4.4-mac-x86_64 | OK | Apr 01 2025 |
| R-4.4-mac-aarch64 | OK | Apr 01 2025 |
| R-4.4-linux-x86_64 | OK | Apr 01 2025 |
| R-4.3-win-x86_64 | OK | Apr 01 2025 |
| R-4.3-mac-x86_64 | OK | Apr 01 2025 |
| R-4.3-mac-aarch64 | OK | Apr 01 2025 |
Exports:chisqchisqtestduchers_zestimate_problassielassie_getlewontin_dlocal_associationpermtestpmipreprocesswrite.lassie
Dependencies:clicolorspacedata.tablefansifarverggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigplyrR6RColorBrewerRcppreshape2rlangscalesstringistringrtibbleutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Chi-squared test | chisqtest |
| Estimate marginal and multivariate probabilities | estimate_prob |
| Format a lassie object | format.lassie |
| Local Association Measures | lassie |
| Return the value of 'lassie' object | lassie_get |
| Local Association Measures | chisq duchers_z lewontin_d local_association pmi |
| Permutation test for local and global association measures | permtest |
| Plot a lassie object | plot.lassie |
| Preprocess data | preprocess |
| Print a lassie object | print.lassie |
| Write a lassie object | write.lassie |
| zebu: Local Association Measures | zebu-package zebu |
