Summary | Proof of lower bound formula
Package: zebu 0.2.2.0
zebu: Local Association Measures
Implements the estimation of local (and global) association measures: Lewontin's D, Ducher's Z, pointwise mutual information, normalized pointwise mutual information and chi-squared residuals. The significance of local (and global) association is accessed using p-values estimated by permutations.
Authors:
zebu_0.2.2.0.tar.gz
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zebu_0.2.2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
zebu/json (API)
| # Install 'zebu' in R: |
| install.packages('zebu', repos = c('https://omfmartin.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/oliviermfmartin/zebu/issues
Last updated from:514a78fdfe. Checks:15 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 152 | ||
| linux-devel-x86_64 | OK | 189 | ||
| source / vignettes | OK | 227 | ||
| linux-release-arm64 | OK | 177 | ||
| linux-release-x86_64 | OK | 163 | ||
| macos-release-arm64 | OK | 126 | ||
| macos-release-x86_64 | OK | 384 | ||
| macos-oldrel-arm64 | OK | 128 | ||
| macos-oldrel-x86_64 | OK | 390 | ||
| windows-devel-arm64 | OK | 357 | ||
| windows-devel-x86_64 | OK | 146 | ||
| windows-release-arm64 | OK | 364 | ||
| windows-release-x86_64 | OK | 114 | ||
| windows-oldrel-x86_64 | OK | 123 | ||
| wasm-release | OK | 129 |
Exports:chisqchisqtestduchers_zestimate_problassielassie_getlewontin_dlocal_associationpermtestpmipreprocesswrite.lassie
Dependencies:clicpp11data.tablefarverggplot2gluegtableisobandlabelinglifecyclemagrittrplyrR6RColorBrewerRcppreshape2rlangS7scalesstringistringrvctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Chi-squared test | chisqtest |
| Estimate marginal and multivariate probabilities | estimate_prob |
| Format a lassie object | format.lassie |
| Local Association Measures | lassie |
| Return the value of 'lassie' object | lassie_get |
| Local Association Measures | chisq duchers_z lewontin_d local_association pmi |
| Permutation test for local and global association measures | permtest |
| Plot a lassie object | plot.lassie |
| Preprocess data | preprocess |
| Print a lassie object | print.lassie |
| Write a lassie object | write.lassie |
| zebu: Local Association Measures | zebu-package zebu |